Difference between revisions of "Walkthrough on GUI based tilt series alignment"

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= Entering the data =
 
= Entering the data =
  
= The alignment areas =
+
=== Discarded tilt angles ===
 +
= The areas  in the alignment task=
  
 
== Detection ==
 
== Detection ==
 +
 +
=== Visualization matrix ===
 +
This step just creates a binned version of the tilt series stack to accelerate visualizations that will be invoked in a later point.
 +
 +
=== Detection of gold beads ===
  
 
== Indexing ==  
 
== Indexing ==  

Revision as of 11:23, 26 August 2019

Dynamo includes a

Data

Creating a workflow alignment

GUI description

Entering the data

Discarded tilt angles

The areas in the alignment task

Detection

Visualization matrix

This step just creates a binned version of the tilt series stack to accelerate visualizations that will be invoked in a later point.

Detection of gold beads

Indexing

Alignment

Fixed the markers

CTF

In this GUI CTF estimation and correction are delegated to CTFFIND4 and Imod's ctfphaseflip programs respectively.

Reconstruction

Binned reconstruction

Full sized reconstruction