Difference between revisions of "Getting started"

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The best way to learn ''Dynamo''on your own is to follow the materials in one of our 2 day-workshops [[EMBO workshop 2020: this one]]
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== Starters guide ==
 
== Starters guide ==
If you want a plunge-freeze immersion in ''Dynamo'' from scratch , you can start by following the [[Starters guide| starters guide]]. This is a short hands-on complete walkthrough through the main functionalities in ''Dynamo'': [[Viewing tomograms|viewing]] and [[Catalogue|organizing]] tomograms, [[Particle extraction|extracting particles]], [[Subtomogram alignment|aligning]], averaging and [[Classification|classifying]] subtomograms, and [[Adaptive bandpass filtering|avoiding overfitting]].
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Concerning the task of subtomogram averaging, you can get a plunge-freeze immersion in ''Dynamo'' for from scratch, by following the [[Starters guide| starters guide]]. This is a short hands-on complete walkthrough through the main functionalities in ''Dynamo'': [[Viewing tomograms|viewing]] and [[Catalogue|organizing]] tomograms, [[Particle extraction|extracting particles]], [[Subtomogram alignment|aligning]], averaging and [[Classification|classifying]] subtomograms, and [[Adaptive bandpass filtering|avoiding overfitting]].
 
 
== Tutorials ==
 
 
 
There are several [[pdf tutorials|tutorials] defined for specific tasks. Some of of them address basic aspects:
 
  
* This tutorial walks you through the creation of an alignment project with synthetic subtomograms (skipping the particle creation part)
 
* This tutorial shows you some basic formats (as tables and data) and teaches you basic manipulations.
 
  
 
== Getting help ==
 
== Getting help ==
''Dynamo'' offers several ways of [[Getting help|getting help]] on specific subjects.... and of course, you can always [emailto: daniel.castano@unibas.ch contact us]
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''Dynamo'' offers several ways of [[Getting help|getting help]] on specific subjects.... and of course, you can always [[https://groups.google.com/forum/#!forum/dynamo-for-cryo-electron-tomography contact our forum in Google Groups]]

Latest revision as of 10:08, 26 February 2021

The best way to learn Dynamoon your own is to follow the materials in one of our 2 day-workshops EMBO workshop 2020: this one


Starters guide

Concerning the task of subtomogram averaging, you can get a plunge-freeze immersion in Dynamo for from scratch, by following the starters guide. This is a short hands-on complete walkthrough through the main functionalities in Dynamo: viewing and organizing tomograms, extracting particles, aligning, averaging and classifying subtomograms, and avoiding overfitting.


Getting help

Dynamo offers several ways of getting help on specific subjects.... and of course, you can always [contact our forum in Google Groups]