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• GPU identifiers
  === On the GUI=== In the [[dcp GUI]] go to the [[computing environment GUI]]. In the GPU panel there is an edit field for the gpu identifiers.
  1 KB (214 words) - 11:17, 25 October 2017
• Alignment project
  ...esign the operations carried on the particles, to select and configure the environment where the actual computations will occur, to start the computations and to ...used in very few special cases. The [[smoothing mask]] is the one used for computing Fourier Shell Correlations.
  5 KB (793 words) - 09:41, 27 October 2017
• GPU
  Your execution environment should include a {{t|LD_LIBRARY_PATH}} environment variable that includes the location of the CUDA libraries. === With the {{t|dcp}} GUI ===
  5 KB (902 words) - 08:44, 2 September 2016
• Standalone
  ...iew tomograms or analyse results. In a second linux shell (let's call it ''computing shell''), you can launch the projects edited on the first shell. *Using the Wizard GUI
  7 KB (1,143 words) - 15:56, 4 May 2018
• MPI Cluster
  If you are lucky enough, your cluster environment should have some information system (like a webpage) that tells you the mod You need first to tune several parameters in your project, through the GUI or the command line.
  8 KB (1,287 words) - 13:09, 18 September 2017
• EMBO workshop 2020
  * [[Walkthrough on GUI based tilt series alignment ]] ...U computing in the dcp GUI, set the following parameters under ''computing environment''
  9 KB (1,391 words) - 16:19, 25 August 2020
• Averaging of subtomograms
  ...ilable [[table|metadata]]), use the <tt>[[daverage]]</tt> command, or its GUI version {{t|daverage_GUI}}. {{docfunction|dynamo_average|daverage}}, with t ...ompensation: they drive the imposition of a mask on the raw average before computing its Fourier transform for division with the <tt>'fweight'</tt>. Note that w
  5 KB (818 words) - 18:09, 6 December 2017
• Starters guide (workshop version)
  ...table. All of these files we generated before. Start the alignment project GUI by typing ...ble (e.g., 24). Leave the rest as it is and click ''ok''. In the alignment GUI click ''check'' and ''unfold''. To run the project
  15 KB (2,427 words) - 19:27, 3 September 2021
• Starters guide (EMBO2021)
  ...efore. You can close all the previous GUIs and start the alignment project GUI by typing ...sors you have). Leave the rest as it is and click ''ok''. In the alignment GUI click ''check'' and ''unfold''. To run the project open a new terminal (in
  15 KB (2,422 words) - 16:17, 13 September 2021
• Starters guide
  ...PU, for this you will need a Matlab version 2014b or higher and a Parallel Computing Toolbox, or a [[standalone]] installation. This tutorial focuses on the basic GUI functionality however the real power of ''Dynamo'' lays in its flexibility
  24 KB (3,775 words) - 16:39, 6 September 2021
• Getting a Structure from Multiple Tomograms of HIV Capsids (walkthrough)
  Next we set up the numerical parameters for the project and the computing environment (type ''dvhelp'' in the console for an overview of all parameters). We use Everything can of course also be set up through the alignment project GUI. The numerical parameters would correspond to:
  22 KB (3,572 words) - 14:13, 18 August 2021
• Advanced starters guide (EMBO2021)
  === Operation with GUI=== These steps could have been performed thorough the <tt>dcm</tt> GUI
  46 KB (7,267 words) - 12:09, 13 September 2021
• Advanced starters guide
  === Operation with GUI=== These steps could have been performed thorough the <tt>dcm</tt> GUI
  47 KB (7,432 words) - 18:41, 3 September 2021
• Practicals Birkbeck 2019
  === Operation with GUI=== These steps could have been performed thorough the <tt>dcm</tt> GUI
  37 KB (5,792 words) - 20:30, 2 September 2019